Normally somewhere in this introduction I plug following @botanyone on Twitter. However, if you're a PhD student, then Plantae is also a good place to be. This week, for example, people have been sharing a webinar on how to prepare a manuscript for submission.
From Botany One
Distribution of Veronica polyploids is influenced by both habitat differentiation and historic glaciation
Species with higher ploidy levels prefer cooler, wetter habitats than diploids.
Gene copy number is associated with phytochemistry in Cannabis sativa
THCA and CBDA were thought to have a simple mode of inheritance; however, a recent study by Vergara et al. describes that in fact multiple gene copies are involved in their production.
The Next Generation of Natural Historians
Recap of the Student Spotlights 2020: Discover the next generation of natural historians event at the Linnean Society.
Climate change threatens the first line of defence against coastal storms
When the storms come in, plants could help secure natural defences. But climate change is giving them problems of their own.
Scaly Tree Ferns Have Slow and Steady Diversification
Did the Cyatheaceae become such a diverse family slowly over time, or in spurts? The largest molecular sampling yet points to gradual accumulation of species.
Nature Table – BBC Radio 4
BBC Radio 4 has a new science-comedy crossover show.
Sodium chloride solutions not a good experimental substitute for sea water
Simulating seawater in the lab is more complicated than just getting the salt concentration right.
Decrypting the tubby-like protein gene family in cassava
Dong et al. identify and characterise the cassava TLP gene family, MeTLP, at the genomic level.
Does Viagra really help preserve flowers?
It is said that sildenafil citrate can help preserve flowers. Here’s an experiment that you could do at home, but probably shouldn’t, to find out.
News and Views
Plantae Webinar Recording Available | Preparing your Manuscript for Submission with Mary Williams
In this webinar, ASPB Features Editor Mary Williams will outline the key steps in writing a paper, preparing figures, and navigating the submission process.
World Pulses Day
Pulses, also known as legumes, are the edible seeds of leguminous plants cultivated for food. Dried beans, lentils and peas are the most commonly known and consumed types of pulses.
French court rules sweet grapefruit, barley, wheat and 2500 crops, developed by mutagenizing seeds with toxic chemicals or gamma rays yet often sold as organic, are GMO, must be labeled and cultivation banned
Sometimes a headline makes a summary redundant.
Genetic Literacy Project
"My call for action under the banner #Just1Action4WIS – which of these can you commit to? There should be something for everyone here, whatever their role: as academic, teacher, student, parent or simply a member of the public."
Athene Donald's Blog
Global economic growth will take big hit due to loss of nature
Damage to environment could wipe £368bn a year from growth by 2050 and UK will be hard hit, WWF warns.
Deforested parts of Amazon 'emitting more CO2 than they absorb'
Up to one fifth of the Amazon rainforest is emitting more CO2 than it absorbs, new research suggests.
Antarctic temperature rises above 20C for first time on record
Scientists describe 20.75C logged at Seymour Island as ‘incredible and abnormal’
A Growing Presence on the Farm: Robots
A new generation of autonomous robots is helping plant breeders shape the crops of tomorrow.
The New York Times
Drought-tolerant GMO wheat boosts yields up to 22% in field trials, while drought-tolerant soy could launch in 2020
During the latest harvest, drought-tolerant wheat yielded up to 22.1% more, according to tests conducted on 395 hectares, [the biotech firm] Bioceres said.
Genetic Literacy Project
Curiosity is the first step in fighting the climate crisis
"The origin of the word “biologist” is “life-learner”. If you are gazing at life from a window, swimming in water, hiking up a mountain, or experiencing nature via the dulcet tones of Sir David Attenborough, you are a biologist too." Opinion by Alexandre Antonelli.
An inferred fitness consequence map of the rice genome
Joly-Lopez et al. present a fitness consequence (fitCons) map for rice (Oryza sativa). They inferred fitCons scores (ρ) for 246 inferred genome classes derived from nine functional genomic and epigenomic datasets, including chromatin accessibility, messenger RNA/small RNA transcription, DNA methylation, histone modifications and engaged RNA polymerase activity. These were integrated with genome-wide polymorphism and divergence data from 1,477 rice accessions and 11 reference genome sequences in the Oryzeae.
EXO70D isoforms mediate selective autophagic degradation of Type-A ARR proteins to regulate cytokinin sensitivity
Acheampong et al. describe a mechanistic link between cytokinin signaling and autophagy, demonstrating that plants modulate cytokinin sensitivity through autophagic regulation of type-A ARR proteins. Type-A ARR proteins were degraded by autophagy in an AUTOPHAGY-RELATED (ATG)5-dependent manner. EXO70D family members interacted with Type-A ARR proteins, likely in a phosphorylation-dependent manner, and recruited them to autophagosomes via interaction with the core autophagy protein, ATG8. Consistently, loss-of-function exo70D1,2,3 mutants compromised targeting of type-A ARRs to autophagic vesicles, have elevated levels of type-A ARR proteins, and are hyposensitive to cytokinin.
Imaging plant germline differentiation within Arabidopsis flowers by light sheet microscopy
In higher plants, germline differentiation occurs during a relatively short period within developing flowers. Understanding of the mechanisms that govern germline differentiation lags behind other plant developmental processes. This is largely because the germline is restricted to relatively few cells buried deep within floral tissues, which makes them difficult to study. To overcome this limitation, Valuchova et al. have developed a methodology for live imaging of the germ cell lineage within floral organs of Arabidopsis using light sheet fluorescence microscopy.
The hornwort genome and early land plant evolution
Zhang et al. report the draft genome sequence of the hornwort Anthoceros angustus. Phylogenomic inferences confirm the monophyly of bryophytes, with hornworts sister to liverworts and mosses. The simple morphology of hornworts correlates with low genetic redundancy in plant body plan, while the basic transcriptional regulation toolkit for plant development has already been established in this early land plant lineage. Although the Anthoceros genome is small and characterized by minimal redundancy, expansions are observed in gene families related to RNA editing, UV protection and desiccation tolerance.
The strength and pattern of natural selection on gene expression in rice
Groen et al. assayed gene expression in rice (Oryza sativa), and used phenotypic selection analysis to estimate the type and strength of selection on the levels of more than 15,000 transcripts. Variation in most transcripts appears (nearly) neutral or under very weak stabilizing selection in wet paddy conditions (with median standardized selection differentials near zero), but selection is stronger under drought conditions.
Genomics of sorghum local adaptation to a parasitic plant | PNAS
Bellis et al. develop a framework to characterize associations between genome variants in global landraces (traditional varieties) of the staple crop sorghum with the distribution of the devastating parasitic weed Striga hermonthica. They find long-term maintenance of diversity in genes related to parasite resistance, highlighting an important role of host adaptation for coevolutionary dynamics in smallholder agroecosystems.
The pan-genome effector-triggered immunity landscape of a host-pathogen interaction
Plant pathogens elicit an immune response through effector proteins. In turn, plant genomes encode genes that determine species-specific recognition of these effectors by a process known collectively as effector-triggered immunity (ETI). By examining a range of strains of the pathogen Pseudomonas syringae that infect the model plant Arabidopsis thaliana, Laflamme et al. generated a P. syringae Type III Effector Compendium (PsyTEC) and in turn identified the genes responsible for ETI in Arabidopsis.
TOR dynamically regulates plant cell–cell transport
Brunkard et al. show that the ancient eukaryotic TARGET OF RAPAMYCIN (TOR) metabolic signaling network controls plasmodesmata (PD) transport in plants. TOR is a protein kinase that is activated by nutrients, including sugars, and then coordinates growth with nutrient availability. Our study demonstrates that TOR has evolved new roles in plants by regulating cell–cell connectivity via PD.
Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff
VanBuren et al. report a chromosome-scale assembly of allotetraploid teff (variety Dabbi) and patterns of subgenome dynamics. The teff genome contains two complete sets of homoeologous chromosomes, with most genes maintaining as syntenic gene pairs. TE analysis allows them to estimate that the teff polyploidy event occurred ~1.1 million years ago (mya) and that the two subgenomes diverged ~5.0 mya. Despite this divergence, they detect no large-scale structural rearrangements, homoeologous exchanges, or biased gene loss, in contrast to many other allopolyploids.
Ecological strategies begin at germination: traits, plasticity, and survival in the first four days of plant life
We commonly use trait variation to characterize plant function within and among species and understand how vegetation responds to the environment. Seedling emergence is an especially vulnerable window affecting population and community dynamics, yet trait‐based frameworks often bypass this earliest stage of plant life. Larson et al. assess whether traits vary in ecologically‐meaningful ways when seedlings are just days old. How do shared evolutionary history and environmental conditions shape trait expression, and can traits explain which seedlings endure drought?
We store your email in order to know who to send the emails to. We have to share that list with MailChimp because they’re the company that actually sends the emails out. We get information about how many emails open, so it might be 50% one week, but we wouldn’t be able to tell if you were in the half that opens the email or the half that didn’t. Each email has an unsubscribe link in the footer, if you’d like to unsubscribe at any time. We pay per email sent, so we are very eager that people who aren’t interested unsubscribe.
By the way, that unsubscribe link is unique to you. It’s the only time we explicitly know you have clicked on something in the email. That’s so we can unsubscribe you instead of a random person. If you get forwarded someone else’s copy of the email and you click the unsubscribe link you unsubscribe them.